Basic Information
Locus ID:
nbisL1-mrna-19598
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 1635585 | 1639401 | + | nbisL1-mrna-19598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 21,165.51 Da | 45.96 | 93.32 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 74 | 144 | 1.2E-17 | IPR001351 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 11 | 51 | 4.58E-7 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 45 | 147 | 4.32E-21 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 3 | 44 | 1.7E-11 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 45 | 175 | 1.8E-57 | IPR036419 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_021664000.1 | 40S ribosomal protein S3-3-like [Hevea brasiliensis] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KSS4 | Uncharacterized protein MANES_03G052600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology