Basic Information
Locus ID:
nbisL1-mrna-19592
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glycosyl transferase family 1 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000198F_pilon | 188573 | 195452 | - | nbisL1-mrna-19592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 121,828.91 Da | 45.27 | 85.89 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00534 | Glycosyl transferases group 1 | 359 | 493 | 4.6E-8 | IPR001296 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 156 | 489 | 1.65E-15 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 162 | 305 | 2.7E-13 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 308 | 491 | 2.7E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1005 | 1031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1039 | 1058 | - | - |
| Coils | Coil | Coil | 602 | 629 | - | - |
| Coils | Coil | Coil | 1007 | 1027 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01210.1 | glycosyl transferase family 1 protein. | 0 |
| RefSeq | XP_021644116.1 | uncharacterized protein LOC110638026 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2JAP5 | Glycos_transf_1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1971, jg29608 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1671 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022918 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g003800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4033, Sbi_jg49235 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6006 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000520 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10996, Sgl16405 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014010, gene:ENSEOMG00000036069 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003650, CQ.Regalona.r1.2BG0025590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005190 |
| Apiaceae | Apium graveolens | 1 | Ag6G01565 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003450, COCNU_14G001920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708367, gene-LOC103716003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1738.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G06273, Ftri7G00228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028385m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g041460.2N, BniB08g043180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1210 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1250 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g01990, gene.Cymno16g02230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g17260, gene.Thate09g15410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039287 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03584, Lb4G25409 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2376, BH02.2485, CH02.2665 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0025080, gene-QOZ80_1BG0075630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0273270.1 |
| Poaceae | Oryza coarctata | 1 | Oco02G015170 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G199300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603414, Pt_Chr0603434 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015010, Chr03G011330, Chr08G011530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G384300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG033640, gene_TRIDC3BG038180 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G224700.1, TraesCS3B02G254200.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159550_P002, Zm00001eb358450_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29214, nbis-gene-50536 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10678, Zma_g8246 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2215, evm.TU.LG06.89, evm.TU.LG19.1245 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.561 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21676 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6975 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7366 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.234 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017653 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1731 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19592 |
| Salicaceae | Populus euphratica | 2 | populus_peu27619, populus_peu31608 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645507 |
| Solanaceae | Solanum chilense | 1 | SOLCI004775700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006478 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28958_chr11_-, gene_15213 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2172 |
| Zosteraceae | Zostera marina | 2 | Zosma01g09490.v3.1, Zosma05g13790.v3.1 |