Basic Information
Locus ID:
nbisL1-mrna-19592
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 1729792 | 1730601 | - | nbisL1-mrna-19592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 30,381.70 Da | 53.27 | 96.36 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 49 | 78 | 5.1E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 107 | 2.47E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 139 | 1.8E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 104 | 10.010774 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 68 | 77 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042981249.1 | uncharacterized protein LOC122310994 [Carya illinoinensis] | 0 |
| TrEMBL | A0A1Q3C2X7 | Zf-RING_LisH domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology