Basic Information
Locus ID:
nbisL1-mrna-19543
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 1310950 | 1315396 | + | nbisL1-mrna-19543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 70,984.46 Da | 40.57 | 96.13 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 5.33911E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 457 | 495 | 5.1E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 247 | 317 | 5.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 375 | 413 | 5.2E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 323 | 4.01E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 345 | 625 | 2.12E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 521 | 9.6E-39 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 522 | 639 | 1.5E-15 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 118 | 1.5E-10 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 320 | 3.6E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 374 | 414 | 8.8E-7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 4.3E-37 | IPR003613 |
| SMART | SM00185 | arm_5 | 415 | 455 | 0.17 | IPR000225 |
| SMART | SM00185 | arm_5 | 497 | 537 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 580 | 620 | 89.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 456 | 496 | 5.5E-4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | 12.1624 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 508 | 550 | 9.2924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 46.592068 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 643 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYI5 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology