Basic Information
Locus ID:
nbisL1-mrna-19480
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
mitogen-activated protein kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 11057013 | 11063586 | + | nbisL1-mrna-19480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 36,022.75 Da | 64.51 | 87.44 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 68 | 314 | 3.2E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 317 | 2.77E-54 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 22 | 138 | 2.7E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 321 | 2.6E-35 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 56 | 314 | 34.421249 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21220.1 | MAP kinase kinase 5. Encodes a mitogen-activated kinase kinase, dual specific protein kinase that is expressed in vegetative tissues and floral buds. Involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK4.In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. | 0 |
| RefSeq | XP_021597592.1 | - | 0 |
| Q8RXG3 | Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MKK5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1Q3CR92 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12192 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7050 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19993 |