HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-19424
Species & Taxonomic ID: Carallia pectinifolia & 98586
Genome Assembly: GCA_037832335.1
Description: F-box domain
Maps and Mapping Data
Chromosome Start End Strand ID
chr08 10562997 10565784 + nbisL1-mrna-19424
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.68 11,948.24 Da 76.45 73.10 -0.83
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 40 74 1.1E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 36 79 4.06E-12 IPR036047
Gene3D G3DSA:1.20.1280.50 - 20 79 1.7E-7 -
ProSiteProfiles PS50181 F-box domain profile. 36 84 8.861604 IPR001810
MobiDBLite mobidb-lite consensus disorder prediction 1 23 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 30 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G42770.1 F-box/RNI-like/FBD-like domains-containing protein. 0
RefSeq XP_050216640.1 - 0
Swiss-Prot Q9M190 Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana OX=3702 GN=At3g42770 PE=4 SV=1 0
TrEMBL A0A1U8GDY3 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda glauca 1 Sgl52245
Dunaliellaceae Dunaliella salina 1 Dusal.0175s00007.v1.0
Poaceae Echinochloa crus-galli 38 AH01.2194, AH03.3309, AH03.3310, AH03.92, AH03.93, AH03.95 ...
AH03.97, AH04.1753, AH04.1754, AH07.1987, AH07.412, BH03.149, BH03.3474, BH03.3493, BH04.1755, BH04.1757, BH05.3281, BH05.3394, BH05.3991, BH07.529, BH07.537, CH02.3867, CH03.150, CH03.151, CH03.211, CH03.3694, CH03.3695, CH03.3705, CH03.3706, CH03.53, CH05.3376, CH05.3385, CH05.3387, CH05.3388, Contig1297.2, Contig1297.4, Contig1297.5, Contig1297.7
Poaceae Eleusine coracana subsp. coracana 33 gene-QOZ80_2AG0111000, gene-QOZ80_2AG0111010 ...
gene-QOZ80_2BG0164450, gene-QOZ80_4BG0348370, gene-QOZ80_5AG0367070, gene-QOZ80_5AG0387690, gene-QOZ80_5BG0415190, gene-QOZ80_5BG0454240, gene-QOZ80_5BG0454250, gene-QOZ80_7AG0553160, gene-QOZ80_7AG0553170, gene-QOZ80_7AG0553180, gene-QOZ80_7AG0553190, gene-QOZ80_7AG0553200, gene-QOZ80_7AG0553230, gene-QOZ80_7AG0553240, gene-QOZ80_7AG0553250, gene-QOZ80_7AG0555680, gene-QOZ80_7AG0559090, gene-QOZ80_7AG0571290, gene-QOZ80_7AG0571560, gene-QOZ80_7BG0584270, gene-QOZ80_7BG0584290, gene-QOZ80_7BG0586650, gene-QOZ80_7BG0590350, gene-QOZ80_7BG0602720, gene-QOZ80_7BG0603220, gene-QOZ80_7BG0603240, gene-QOZ80_7BG0603300, gene-QOZ80_7BG0603320, gene-QOZ80_9AG0684190, gene-QOZ80_9BG0710270, gene-QOZ80_UnG0726170
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.1HG0018810.1, HORVU.MOREX.r3.2HG0155620.1 ...
HORVU.MOREX.r3.2HG0155680.1, HORVU.MOREX.r3.2HG0156270.1, HORVU.MOREX.r3.2HG0193230.1, HORVU.MOREX.r3.3HG0239610.1.CDS1, HORVU.MOREX.r3.4HG0395620.1.CDS1
Poaceae Lolium multiflorum 43 gene-QYE76_009425, gene-QYE76_009426, gene-QYE76_009517 ...
gene-QYE76_009518, gene-QYE76_009534, gene-QYE76_009536, gene-QYE76_009541, gene-QYE76_009544, gene-QYE76_009829, gene-QYE76_009853, gene-QYE76_010033, gene-QYE76_010968, gene-QYE76_010969, gene-QYE76_010972, gene-QYE76_013861, gene-QYE76_016365, gene-QYE76_016544, gene-QYE76_027139, gene-QYE76_030511, gene-QYE76_030519, gene-QYE76_039830, gene-QYE76_040676, gene-QYE76_043209, gene-QYE76_046139, gene-QYE76_049207, gene-QYE76_049873, gene-QYE76_050043, gene-QYE76_050284, gene-QYE76_050292, gene-QYE76_050294, gene-QYE76_050835, gene-QYE76_056879, gene-QYE76_057719, gene-QYE76_059966, gene-QYE76_064716, gene-QYE76_068849, gene-QYE76_068850, gene-QYE76_068852, gene-QYE76_068879, gene-QYE76_069011, gene-QYE76_071942, gene-QYE76_071955, gene-QYE76_071956
Poaceae Oryza coarctata 17 Oco01G011170, Oco02G010020, Oco05G025270, Oco12G006760 ...
Oco13G001270, Oco13G009520, Oco14G000530, Oco14G001340, Oco14G001350, Oco14G001390, Oco14G004550, Oco14G004690, Oco14G005510, Oco14G010090, Oco14G010100, Oco14G010120, Oco14G010190
Poaceae Oryza sativa 17 LOC_Os07g02290.1, LOC_Os07g02760.1, LOC_Os07g02770.1 ...
LOC_Os07g04980.1, LOC_Os07g12540.1, LOC_Os07g12560.1, LOC_Os07g12590.2, LOC_Os07g12600.1, LOC_Os07g12610.1, LOC_Os07g36320.1, LOC_Os07g36330.1, LOC_Os07g36340.1, LOC_Os07g36360.1, LOC_Os07g36370.1, LOC_Os07g36400.1, LOC_Os07g36520.1, LOC_Os07g36530.1
Poaceae Paspalum vaginatum 19 gene-BS78_01G085500, gene-BS78_01G128700 ...
gene-BS78_02G012100, gene-BS78_02G012600, gene-BS78_02G013000, gene-BS78_02G013100, gene-BS78_02G063900, gene-BS78_02G309000, gene-BS78_03G168100, gene-BS78_04G025300, gene-BS78_04G025600, gene-BS78_05G063000, gene-BS78_05G177100, gene-BS78_05G177300, gene-BS78_05G177400, gene-BS78_06G155700, gene-BS78_09G039500, gene-BS78_10G233600, gene-BS78_10G233800
Poaceae Puccinellia tenuiflora 31 Pt_Chr0200116, Pt_Chr0200117, Pt_Chr0200122, Pt_Chr0202128 ...
Pt_Chr0202173, Pt_Chr0300431, Pt_Chr0303353, Pt_Chr0303382, Pt_Chr0306501, Pt_Chr0307488, Pt_Chr0500492, Pt_Chr0500495, Pt_Chr0500496, Pt_Chr0500498, Pt_Chr0500499, Pt_Chr0500505, Pt_Chr0500509, Pt_Chr0500554, Pt_Chr0500556, Pt_Chr0501507, Pt_Chr0501622, Pt_Chr0501685, Pt_Chr0501735, Pt_Chr0600005, Pt_Chr0600006, Pt_Chr0600018, Pt_Chr0600019, Pt_Chr0600020, Pt_Chr0605107, Pt_Chr0605108, Pt_Chr0605118
Poaceae Sporobolus alterniflorus 8 Chr07G015770, Chr17G004770, Chr19G018670, Chr24G002210 ...
Chr27G001110, Chr27G012420, Chr28G000460, Chr28G008980
Poaceae Thinopyrum elongatum 12 Tel1E01G164700, Tel1E01G194100, Tel1E01G194300 ...
Tel2E01G172600, Tel2E01G474100, Tel2E01G474300, Tel2E01G475800, Tel3E01G151500, Tel3E01G206300, Tel4E01G552700, Tel6E01G181700, Tel7E01G875400
Poaceae Triticum dicoccoides 16 gene_TRIDC1BG014730, gene_TRIDC2AG037320 ...
gene_TRIDC2AG037600, gene_TRIDC2AG037630, gene_TRIDC2AG047080, gene_TRIDC2BG040300, gene_TRIDC2BG040320, gene_TRIDC2BG040520, gene_TRIDC6AG009650, gene_TRIDC7AG066130, gene_TRIDC7AG071420, gene_TRIDC7BG008080, gene_TRIDC7BG059650, gene_TRIDC7BG066540, gene_TRIDC7BG066590, gene_TRIDC7BG066710
Poaceae Triticum aestivum 35 TraesCS1A02G083900.1.cds1, TraesCS1A02G110700.1 ...
TraesCS1A02G436900.1.cds1, TraesCS1A02G437000.1, TraesCS1B02G101200.1, TraesCS2A02G079100.1, TraesCS2A02G263100.1, TraesCS2A02G264200.3, TraesCS2A02G264400.1, TraesCS2A02G342400.1, TraesCS2A02G435800.1, TraesCS2B02G093900.1, TraesCS2B02G277700.1, TraesCS2B02G277900.1, TraesCS2B02G339900.1, TraesCS2B02G457400.1, TraesCS2D02G259500.1, TraesCS2D02G259700.2, TraesCS2D02G260900.1, TraesCS2D02G434100.1, TraesCS3A02G119900.1.cds1, TraesCS3B02G100300.1, TraesCS3B02G139300.1, TraesCS3D02G085200.1, TraesCS3D02G122000.1, TraesCS6A02G078500.1, TraesCS6A02G085500.1, TraesCS6B02G268400.1, TraesCS7A02G473800.1, TraesCS7A02G509700.1, TraesCS7B02G375100.1, TraesCS7B02G419600.1, TraesCS7B02G420000.1, TraesCS7D02G348800.1.cds1, TraesCS7D02G499100.1
Poaceae Zea mays 3 Zm00001eb116530_P002, Zm00001eb162720_P001 ...
Zm00001eb168800_P001
Poaceae Zoysia japonica 6 nbis-gene-35863, nbis-gene-35864, nbis-gene-35865 ...
nbis-gene-50425, nbis-gene-56969, nbis-gene-57498
Poaceae Zoysia macrostachya 2 Zma_g4686, Zma_g6614
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-19424
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.