Basic Information
Locus ID:
nbisL1-mrna-19412
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 204018 | 204581 | - | nbisL1-mrna-19412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 14,675.46 Da | 70.36 | 73.94 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 48 | 95 | 6.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 101 | 2.08E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 112 | 3.3E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 95 | 10.718918 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 132 | - | - |
| Coils | Coil | Coil | 28 | 48 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039055536.1 | RING-H2 finger protein ATL33-like [Hibiscus syriacus] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.178 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G029600 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19412 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21571 |