Basic Information
Locus ID:
nbisL1-mrna-19391
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 10298351 | 10306637 | - | nbisL1-mrna-19391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 86,987.11 Da | 55.79 | 72.18 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 3.8E-8 | IPR002893 |
| Pfam | PF13423 | Ubiquitin carboxyl-terminal hydrolase | 403 | 549 | 3.7E-9 | IPR028881 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 439 | 568 | 2.35E-30 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 72 | 116 | 4.88E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 67 | 117 | 3.5E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 412 | 563 | 1.6E-29 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 340 | 713 | 13.824248 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 721 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_043808900.1 | ubiquitin carboxyl-terminal hydrolase 17 [Manihot esculenta] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7C0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology