Basic Information
Locus ID:
nbisL1-mrna-19390
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9771600 | 9772220 | - | nbisL1-mrna-19390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 22,490.54 Da | 57.24 | 90.92 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 120 | 164 | 1.11351E-17 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 164 | 7.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 166 | 1.48E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 167 | 5.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 163 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 164 | 12.135206 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22670.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_052310636.1 | RING-H2 finger protein ATL39-like [Populus trichocarpa] | 0 |
| F4I2Y3 | Receptor homology region, transmembrane domain- and RING domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=RMR3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N5MP58 | RING-type domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_007696 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.104 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-258 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14319 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5898 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.484 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006795 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19390 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2421 |
| Salicaceae | Populus euphratica | 2 | populus_peu14130, populus_peu23263 |