Basic Information
Locus ID:
nbisL1-mrna-19388
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000181F_pilon | 449419 | 459428 | - | nbisL1-mrna-19388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 79,280.44 Da | 54.10 | 77.77 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 149 | 204 | 1.14025E-10 | - |
| Pfam | PF00620 | RhoGAP domain | 148 | 211 | 1.3E-12 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 505 | 585 | 2.8E-21 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 150 | 260 | 2.16E-14 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 111 | 268 | 2.1E-18 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 55 | 255 | 0.0061 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 17 | 258 | 12.588721 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 386 | - | - |
| Coils | Coil | Coil | 495 | 529 | - | - |
| Coils | Coil | Coil | 463 | 490 | - | - |
| Coils | Coil | Coil | 554 | 588 | - | - |
| Coils | Coil | Coil | 672 | 692 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_037497563.1 | rho GTPase-activating protein 7 [Jatropha curcas] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology