Basic Information
Locus ID:
nbisL1-mrna-19362
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 10019680 | 10027551 | + | nbisL1-mrna-19362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 79,433.55 Da | 30.80 | 75.11 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 64 | 351 | 1.98198E-80 | - |
| CDD | cd10317 | RGL4_C | 500 | 687 | 1.69424E-57 | - |
| CDD | cd10316 | RGL4_M | 389 | 488 | 9.12821E-34 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 53 | 258 | 1.6E-92 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 498 | 686 | 7.8E-56 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 412 | 482 | 4.7E-26 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 412 | 479 | 8.24E-9 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 72 | 352 | 4.08E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 495 | 687 | 1.53E-52 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 387 | 484 | 3.1E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 496 | 687 | 2.0E-21 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 66 | 356 | 4.6E-6 | IPR014718 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021642377.1 | probable rhamnogalacturonate lyase B [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2INM9 | rhamnogalacturonan endolyase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology