Basic Information
Locus ID:
nbisL1-mrna-19349
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000121F_pilon | 883021 | 884058 | - | nbisL1-mrna-19349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 38,897.13 Da | 50.18 | 85.36 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 204 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 295 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 56 | 301 | 1.55E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 344 | 1.1E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 166 | 204 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 251 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 163 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 298 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 304 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021657892.1 | WD repeat-containing protein LWD1 [Hevea brasiliensis] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6N9Y2 | WD_REPEATS_REGION domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_032750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology