Basic Information
Locus ID:
nbisL1-mrna-19286
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000121F_pilon | 528008 | 528716 | - | nbisL1-mrna-19286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.12 | 16,543.32 Da | 36.33 | 87.78 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 66 | 122 | 1.91773E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 2 | 47 | 9.9E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 65 | 122 | 9.4E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 122 | 5.23E-29 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 64 | 8.2E-11 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 65 | 123 | 4.1E-20 | - |
| SMART | SM00054 | efh_1 | 102 | 136 | 1.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 27 | 55 | 68.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 66 | 94 | 3.8E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1 | 22 | 8.209045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 62 | 97 | 14.84815 | IPR002048 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_022736636.1 | probable calcium-binding protein CML15 [Durio zibethinus] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J8QT53 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology