Basic Information
Locus ID:
nbisL1-mrna-19263
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DNA excision repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 8968172 | 8974852 | - | nbisL1-mrna-19263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 90,609.10 Da | 45.68 | 76.71 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 404 | 0.0012 | IPR001680 |
| Pfam | PF00646 | F-box domain | 462 | 503 | 4.5E-9 | IPR001810 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 183 | 4.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 64 | 96 | 0.007 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 413 | 1.51E-40 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 455 | 527 | 2.14E-8 | IPR036047 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 308 | 737 | 2.35E-12 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 407 | 2.7E-25 | IPR015943 |
| Gene3D | G3DSA:2.120.10.80 | - | 582 | 807 | 2.3E-6 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 450 | 501 | 7.3E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 229 | 1.8E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 143 | 183 | 1.8E-7 | IPR001680 |
| SMART | SM00256 | fbox_2 | 465 | 505 | 1.3E-7 | IPR001810 |
| SMART | SM00320 | WD40_4 | 51 | 96 | 4.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 5.9E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 372 | 404 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 404 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 105 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 63 | 99 | 9.414692 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 185 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 459 | 505 | 10.292301 | IPR001810 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 185 | 11.049229 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 170 | 184 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 170 | 184 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 1.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 23 | 37 | 1.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 267 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27840.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. | 0 |
| RefSeq | XP_021676513.1 | DNA excision repair protein ERCC-8-like [Hevea brasiliensis] | 0 |
| Q93ZG3 | WD repeat-containing protein ATCSA-1 OS=Arabidopsis thaliana OX=3702 GN=ATCSA-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6NGK6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10720, jg6202 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6040 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036803 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39669, Sbi_jg55044 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14640 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013177 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12515, Sgl12516 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016659, gene:ENSEOMG00000033617 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0017920, CQ.Regalona.r1.1BG0007190 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043060 |
| Apiaceae | Apium graveolens | 1 | Ag3G00114 |
| Arecaceae | Cocos nucifera | 1 | scaffold000870G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706189 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1725.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G27038 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G19750.1, AT1G27840.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007615m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g24040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g042110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1286 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1390 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0011s00042.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.337 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021744, Pov_00037071 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3941, AH02.3942, BH02.3962, BH07.4272 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040540, gene-QOZ80_1BG0090590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0300880.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056500 |
| Poaceae | Oryza coarctata | 2 | Oco01G025390, Oco02G026300 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g63900.1, LOC_Os02g20430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G343000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105920, Pt_Chr0105957, Pt_Chr0601407, Pt_Chr0601466 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G004100, Chr08G021670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G590800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG053330, gene_TRIDC3BG060000 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G371000.2, TraesCS3B02G403200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147340_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11325 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9044 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.282, evm.TU.LG04.470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g09100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.822 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19263 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6656 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.636 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010672 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13131 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604063 |
| Solanaceae | Solanum chilense | 1 | SOLCI005838500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007238 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31061_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2652 |
| Zosteraceae | Zostera marina | 2 | Zosma04g06990.v3.1, Zosma04g07040.v3.1 |