Basic Information
Locus ID:
nbisL1-mrna-19243
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000121F_pilon | 233044 | 240258 | - | nbisL1-mrna-19243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 65,534.85 Da | 64.32 | 79.55 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 405 | 580 | 9.30182E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 82 | 152 | 6.1E-6 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 403 | 509 | 1.2E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 405 | 536 | 1.44E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 9 | 168 | 3.4E-25 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 385 | 580 | 9.0E-70 | - |
| SMART | SM00232 | pad1_6 | 405 | 533 | 7.2E-19 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 406 | 536 | 30.642477 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 341 | - | - |
| Coils | Coil | Coil | 140 | 160 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_012093028.1 | AMSH-like ubiquitin thioesterase 1 [Jatropha curcas] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M3F9 | AMSH-like ubiquitin thioesterase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology