Basic Information
Locus ID:
nbisL1-mrna-19241
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000121F_pilon | 217423 | 226661 | + | nbisL1-mrna-19241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 132,662.19 Da | 50.28 | 81.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 273 | 414 | 4.04755E-10 | - |
| CDD | cd12108 | Hr-like | 38 | 131 | 3.63235E-20 | - |
| Pfam | PF14599 | Zinc-ribbon | 1102 | 1157 | 2.5E-21 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 944 | 1019 | 2.3E-17 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1010 | 1066 | 1.44E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 937 | 1000 | 6.02E-16 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 656 | 824 | 1.1E-6 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 118 | 1.6E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1069 | 1127 | 2.1E-5 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1128 | 1168 | 9.4E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 271 | 432 | 5.9E-10 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 937 | 1006 | 24.373903 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1009 | 1072 | 29.005108 | IPR017921 |
| Coils | Coil | Coil | 233 | 253 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021653202.1 | zinc finger protein BRUTUS-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251PC99 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology