Basic Information
Locus ID:
nbisL1-mrna-1923
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 2735757 | 2740621 | - | nbisL1-mrna-1923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 69,279.63 Da | 46.91 | 86.34 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 211 | 464 | 1.4E-84 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 118 | 2.5E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 117 | 8.63E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 19 | 121 | 2.1E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.144489 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 488 | 84.941788 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 526 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_021630398.1 | BTB/POZ domain-containing protein NPY4 isoform X1 [Manihot esculenta] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2M5D1 | Uncharacterized protein MANES_12G110000 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology