Basic Information
Locus ID:
nbisL1-mrna-19218
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 8568430 | 8569804 | - | nbisL1-mrna-19218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 18,889.14 Da | 60.70 | 76.15 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 46 | 88 | 2.7E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 102 | 5.89E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 121 | 2.3E-11 | - |
| SMART | SM00256 | fbox_2 | 47 | 87 | 3.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 41 | 87 | 9.444481 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24210.1 | F-box family protein. F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins. | 0 |
| RefSeq | XP_002510145.1 | F-box protein GID2 [Ricinus communis] | 0 |
| Q9STX3 | F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2P627 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22744 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6086 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005984 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16896, Sbi_jg61426 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008267 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24752, Sgl29900 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009276, gene:ENSEOMG00000028349 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009720, CQ.Regalona.r1.4BG0009940 |
| Apiaceae | Apium graveolens | 2 | Ag3G00136, Ag4G02833 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G011010, COCNU_11G007530, COCNU_11G007540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714146, gene-LOC103718852, gene-LOC120111339 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G29795, Ftri16G28571, Ftri18G10200, Ftri9G11094 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000501m.g.v1.0, Thhalv10026481m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g013000.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1796, Ceq05G1368 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1935, Cgl05G1373 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g06710 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1226 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.382 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G21150, Lb6G30217 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2353, BH06.2053, CH07.2234 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0228040.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023211 |
| Poaceae | Oryza coarctata | 1 | Oco03G013570 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g30250.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G126000, gene-BS78_04G181800 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G009040, Chr09G013340, Chr13G009220, Chr15G010600 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G104000, Tel3E01G104400, Tel3E01G104500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG006460, gene_TRIDC3AG006490 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G055700.1.cds1, TraesCS3A02G056000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb121240_P001, Zm00001eb183250_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29822 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13763, Zma_g16556 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.683, evm.TU.LG12.1054 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g14210, gene.Posoc07g07430, gene.Posoc07g11080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.44658.7, evm.TU.Scaffold_8_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19218, nbisL1-mrna-8933 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-917 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20705 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.240, add.evm.TU.utg000018l.130 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003535, Maker00010792 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20058, nbisL1-mrna-20587 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10044, nbisL1-mrna-24055 |
| Salicaceae | Populus euphratica | 1 | populus_peu32020 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627813 |
| Solanaceae | Solanum chilense | 1 | SOLCI002241800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015670 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2592 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36780.v3.1 |