halophFGD

Basic Information

Locus ID: nbisL1-mrna-19176

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr15	4207550	4208815	-	nbisL1-mrna-19176

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.41	45,943.12 Da	51.03	95.25	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14476	Petal formation-expressed	82	397	9.6E-154	IPR027949
Coils	Coil	Coil	259	279	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22030.1	F-box family protein with a domain of unknown function (DUF295).
RefSeq	XP_021688468.1	probable F-box protein At4g22030 [Hevea brasiliensis]
Swiss-Prot	O65451	Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1
TrEMBL	A0A6A6LTY9	F-box protein At4g22030 OS=Hevea brasiliensis OX=3981 GN=GH714_021451 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20436, jg21862, jg21863, jg24795, jg38595
Aizoaceae	Mesembryanthemum crystallinum	1	gene_77
Amaranthaceae	Atriplex hortensis	3	Ah017489, Ah017490, Ah017496
Amaranthaceae	Beta vulgaris	3	BVRB_8g185870, BVRB_8g185880, BVRB_8g185900
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg40180, Sbi_jg40181, Sbi_jg40191, Sbi_jg50158 ... Sbi_jg50159, Sbi_jg50164
Amaranthaceae	Salicornia europaea	3	Seu_jg1766, Seu_jg1767, Seu_jg1770
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011351, GOSA_00011358, GOSA_00011360
Amaranthaceae	Suaeda glauca	5	Sgl46345, Sgl46346, Sgl46355, Sgl51063, Sgl51064
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000033600, gene:ENSEOMG00000046416
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.8AG0001490, CQ.Regalona.r1.8AG0001500 ... CQ.Regalona.r1.8BG0001390, CQ.Regalona.r1.8BG0001400, CQ.Regalona.r1.8BG0001420
Anacardiaceae	Pistacia vera	14	pistato.v30094850, pistato.v30094870, pistato.v30094880 ... pistato.v30094900, pistato.v30156400, pistato.v30156430, pistato.v30196920, pistato.v30196930, pistato.v30196940, pistato.v30196950, pistato.v30196970, pistato.v30196990, pistato.v30197000, pistato.v30197010
Apiaceae	Apium graveolens	6	Ag6G00886, Ag6G00887, Ag7G00590, Ag7G00591, Ag8G01071 ... Ag8G01072
Arecaceae	Cocos nucifera	5	COCNU_02G001650, contig69235210G000010 ... contig69235210G000020, scaffold014375G000040, scaffold076645G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103700463, gene-LOC103700599, gene-LOC103709619
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2055.V1.1, AsparagusV1_01.2057.V1.1 ... AsparagusV1_06.999.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G26149, Ftri18G31499
Brassicaceae	Arabidopsis thaliana	2	AT4G04480.1, AT4G22030.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10026894m.g.v1.0, Thhalv10028702m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g04420.v2.2
Brassicaceae	Brassica nigra	3	BniB08g034470.2N, BniB08g037910.2N, BniB08g047920.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G1327, Ceq04G1626, Ceq04G1627, Ceq04G1628, Ceq04G1629 ... Ceq04G1630, Ceq04G1631, Ceq04G1632, Ceq05G0969
Casuarinaceae	Casuarina glauca	3	Cgl01G1482, Cgl04G1802, Cgl05G0968
Malvaceae	Hibiscus hamabo Siebold & Zucc.	10	nbisL1-mrna-1023, nbisL1-mrna-1024, nbisL1-mrna-3864 ... nbisL1-mrna-3865, nbisL1-mrna-3869, nbisL1-mrna-3870, nbisL1-mrna-3872, nbisL1-mrna-3873, nbisL1-mrna-8074, nbisL1-mrna-8075
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG12.1153, evm.TU.LG12.1154, evm.TU.LG12.1155 ... evm.TU.LG12.1156, evm.TU.LG12.1158, evm.TU.LG12.1159
Plantaginaceae	Plantago ovata	2	Pov_00005956, Pov_00005959
Plumbaginaceae	Limonium bicolor	1	Lb2G13972
Poaceae	Echinochloa crus-galli	7	AH01.2433, AH07.899, AH07.900, BH07.1024, BH07.1025 ... CH07.781, CH07.782
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0106760, gene-QOZ80_2AG0106770 ... gene-QOZ80_2BG0160290
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.6HG0557290.1.CDS1 ... HORVU.MOREX.r3.6HG0570020.1.CDS1, HORVU.MOREX.r3.7HG0651390.1.CDS1, HORVU.MOREX.r3.7HG0651400.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_021742, gene-QYE76_021744, gene-QYE76_021746 ... gene-QYE76_021747, gene-QYE76_021749, gene-QYE76_034730, gene-QYE76_048715
Poaceae	Oryza coarctata	4	Oco03G005950, Oco03G005970, Oco04G006180, Oco04G006190
Poaceae	Oryza sativa	6	LOC_Os02g13190.1, LOC_Os02g13220.1, LOC_Os02g13260.1 ... LOC_Os02g28590.1, LOC_Os05g04570.1, LOC_Os12g01970.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G092200, gene-BS78_04G092300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0605798, Pt_Chr0605799
Poaceae	Sporobolus alterniflorus	7	Chr01G026970, Chr06G032500, Chr0G010000, Chr0G010010 ... Chr11G010120, Chr15G023900, Chr15G023910
Poaceae	Thinopyrum elongatum	9	Tel6E01G244000, Tel6E01G244100, Tel6E01G244200 ... Tel6E01G311900, Tel7E01G212500, Tel7E01G212700, Tel7E01G212900, Tel7E01G213000, Tel7E01G213100
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG014460, gene_TRIDC6AG014470 ... gene_TRIDC6AG021060, gene_TRIDC6BG019890, gene_TRIDC6BG019920, gene_TRIDC6BG026900, gene_TRIDC7AG012330, gene_TRIDC7BG000690, gene_TRIDC7BG000700
Poaceae	Triticum aestivum	15	TraesCS4A02G403800.1.cds1, TraesCS6A02G110500.1.cds1 ... TraesCS6A02G110600.1.cds1, TraesCS6A02G151600.1.cds1, TraesCS6B02G138800.1.cds1, TraesCS6B02G138900.1.cds1, TraesCS6B02G179700.1.cds1, TraesCS6D02G099200.1.cds1, TraesCS6D02G099300.1.cds1, TraesCS6D02G141600.1.cds1, TraesCS7A02G105600.1.cds1, TraesCS7A02G105800.1.cds1, TraesCS7B02G004000.1.cds1, TraesCS7B02G004500.1.cds1, TraesCS7B02G004600.1.cds1
Poaceae	Zea mays	3	Zm00001eb205040_P001, Zm00001eb239750_P001 ... Zm00001eb239760_P001
Poaceae	Zoysia japonica	2	nbis-gene-34288, nbis-gene-34291
Poaceae	Zoysia macrostachya	2	Zma_g15453, Zma_g15454
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1903, evm.TU.LG01.1904, evm.TU.LG01.1905 ... evm.TU.LG14.1090, evm.TU.LG14.1091, evm.TU.LG18.895, evm.TU.LG20.968
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g12050
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.1013, evm.TU.Scaffold_13_RagTag.39 ... evm.TU.Scaffold_13_RagTag.41
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-23964, nbisL1-mrna-29781, nbisL1-mrna-29782 ... nbisL1-mrna-29784
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5445, nbisL1-mrna-8179
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20767, nbisL1-mrna-20769, nbisL1-mrna-21714
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000015l.10, add.evm.TU.utg000015l.9 ... add.evm.TU.utg000027l.10
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-19176, nbisL1-mrna-19177, nbisL1-mrna-20986 ... nbisL1-mrna-22791, nbisL1-mrna-22792, nbisL1-mrna-23107
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-23287, nbisL1-mrna-23418, nbisL1-mrna-23420 ... nbisL1-mrna-23422
Salicaceae	Populus euphratica	8	populus_peu10370, populus_peu10371, populus_peu10372 ... populus_peu10374, populus_peu10375, populus_peu10376, populus_peu18466, populus_peu18467
Solanaceae	Lycium barbarum	9	gene-LOC132622546, gene-LOC132622640, gene-LOC132622797 ... gene-LOC132622798, gene-LOC132622862, gene-LOC132623023, gene-LOC132623025, gene-LOC132623068, gene-LOC132623400
Solanaceae	Solanum chilense	3	SOLCI005821200, SOLCI005821300, SOLCI005821400
Solanaceae	Solanum pennellii	3	gene-LOC107010110, gene-LOC107010799, gene-LOC107010883
Tamaricaceae	Reaumuria soongarica	6	gene_409, gene_410, gene_411, gene_412, gene_413, gene_414
Tamaricaceae	Tamarix chinensis	2	TC08G0098, TC08G0099
Zosteraceae	Zostera marina	1	Zosma01g22770.v3.1