Basic Information
Locus ID:
nbisL1-mrna-19126
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000119F_pilon | 1975516 | 1980134 | - | nbisL1-mrna-19126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 31,135.49 Da | 60.04 | 50.74 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 194 | 252 | 1.7E-27 | IPR039512 |
| Pfam | PF13445 | RING-type zinc-finger | 147 | 187 | 1.9E-7 | IPR027370 |
| Pfam | PF05495 | CHY zinc finger | 11 | 92 | 3.6E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 83 | 140 | 7.45E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 5 | 82 | 1.1E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 195 | 1.74E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 219 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 220 | 258 | 2.1E-20 | - |
| SMART | SM00184 | ring_2 | 147 | 189 | 6.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 190 | 12.090947 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 82 | 146 | 33.914032 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 4 | 80 | 25.47604 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_048233926.1 | E3 ubiquitin-protein ligase RZFP34 [Ricinus communis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W0U5 | RING finger and CHY zinc finger domain-containing protein 1 OS=Manihot esculenta OX=3983 GN=MANES_04G013300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology