Basic Information
Locus ID:
nbisL1-mrna-19092
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 1661145 | 1664444 | - | nbisL1-mrna-19092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 94,765.15 Da | 35.84 | 107.73 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 144 | 203 | 1.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 1.2E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 377 | 1.33E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 362 | 611 | 4.19E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 688 | 833 | 4.07E-12 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 207 | 264 | 8.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 206 | 3.4E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 736 | 856 | 5.6E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 672 | 735 | 3.1E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 335 | 620 | 2.6E-73 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 334 | 1.2E-15 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 551 | 574 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 527 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 4.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 216 | 240 | 130.0 | IPR003591 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 694 | 724 | - | IPR017441 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_021907621.1 | receptor-like protein kinase HSL1 [Carica papaya] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IWX1 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology