Basic Information
Locus ID:
nbisL1-mrna-19027
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat and HMG-box DNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001299F_pilon | 1226244 | 1234468 | + | nbisL1-mrna-19027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 163,054.17 Da | 40.63 | 77.30 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 1415 | 1456 | 5.31449E-21 | - |
| CDD | cd00200 | WD40 | 66 | 301 | 8.11993E-42 | - |
| Pfam | PF12341 | Minichromosome loss protein, Mcl1, middle region | 430 | 699 | 8.5E-82 | IPR022100 |
| Pfam | PF13639 | Ring finger domain | 1415 | 1456 | 5.9E-10 | IPR001841 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 169 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 271 | 9.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 61 | 94 | 7.3E-5 | IPR001680 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1397 | 1462 | 1.9E-18 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 27 | 311 | 1.83E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 27 | 315 | 1.4E-53 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1376 | 1462 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 1415 | 1455 | 6.7E-7 | IPR001841 |
| SMART | SM00320 | WD40_4 | 2 | 52 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 271 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 95 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 179 | 5.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 228 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 63 | 100 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 239 | 273 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 104 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1415 | 1456 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 188 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 184 | 10.047417 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 258 | 272 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1030 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 843 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 946 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42660.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021674846.1 | WD repeat and HMG-box DNA-binding protein 1 [Hevea brasiliensis] | 0 |
| F4JF14 | Protein ENHANCER OF LHP1 1 OS=Arabidopsis thaliana OX=3702 GN=EOL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4T1L9 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018495mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27374 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19719 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001332 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g113660, BVRB_6g145120 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30939, Sbi_jg30942, Sbi_jg45039, Sbi_jg58333 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19547, Seu_jg25936 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004801, GOSA_00004802 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl00282, Sgl04375, Sgl05338, Sgl09444, Sgl12847, Sgl72071 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007547, gene:ENSEOMG00000022511 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018870, CQ.Regalona.r1.5BG0020100 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30145560, pistato.v30146750 |
| Apiaceae | Apium graveolens | 1 | Ag3G00773 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G006010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712743 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.912.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G09563 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G42660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016196m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g17930.v2.2, SpUn0079_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g056420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2343 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07400 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0062s00014.v1.0, Dusal.0167s00021.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27220 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.484 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011964 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26091 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.490, AH03.1296, BH01.249, CH01.83 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0131270, gene-QOZ80_2BG0186610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469740.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004066 |
| Poaceae | Oryza coarctata | 2 | Oco17G001190, Oco18G000730 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g06560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G136500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705055, Pt_Chr0705079 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G001160, Chr11G017590, Chr14G006920, Chr21G005350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G283200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG027490, gene_TRIDC5BG028890 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G166800.1, TraesCS5B02G163900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb308160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49980 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3583 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.101, evm.TU.LG09.1335 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.205 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14239 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10052 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14374 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.256 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010026 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-336 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19027 |
| Salicaceae | Populus euphratica | 2 | populus_peu14493, populus_peu22195 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632817 |
| Solanaceae | Solanum chilense | 1 | SOLCI000542800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012165 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11726 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0021 |
| Zosteraceae | Zostera marina | 1 | Zosma03g29040.v3.1 |