Basic Information
Locus ID:
nbisL1-mrna-18996
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000223F_pilon | 3216048 | 3217055 | + | nbisL1-mrna-18996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 38,146.53 Da | 50.65 | 74.87 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 199 | 240 | 1.88173E-23 | - |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 248 | 1.04E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 245 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 4.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.386007 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015582234.2 | E3 ubiquitin-protein ligase RZF1 [Ricinus communis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | B9SZJ6 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0065560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology