halophFGD

Basic Information

Locus ID: nbisL1-mrna-18987

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: Fasciclin-like arabinogalactan protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr17	4489741	4490469	+	nbisL1-mrna-18987

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.84	26,114.80 Da	30.30	104.79	0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02469	Fasciclin domain	49	181	2.3E-22	IPR000782
SUPERFAMILY	SSF82153	FAS1 domain	34	182	3.4E-28	IPR036378
Gene3D	G3DSA:2.30.180.10	FAS1 domain	21	181	2.5E-21	IPR036378
SMART	SM00554	fasc_3	78	182	9.8E-20	IPR000782
ProSiteProfiles	PS50213	FAS1/BIgH3 domain profile.	37	179	21.813118	IPR000782

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12.
RefSeq	XP_012065117.1	fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
Swiss-Prot	Q8LEE9	Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2
TrEMBL	A0A067L6I5	FAS1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_05548 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14948, jg19344, jg32047, jg35869
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14239, gene_21090
Amaranthaceae	Atriplex hortensis	4	Ah011996, Ah030306, Ah030308, Ah033626
Amaranthaceae	Beta vulgaris	2	BVRB_7g162300, BVRB_9g209410
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11730, Sbi_jg2069, Sbi_jg34447, Sbi_jg46682
Amaranthaceae	Salicornia europaea	2	Seu_jg20971, Seu_jg2701
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005795, GOSA_00025721
Amaranthaceae	Suaeda glauca	6	Sgl71205, Sgl74775, Sgl79738, Sgl79747, Sgl82199, Sgl82201
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007483, gene:ENSEOMG00000018056 ... gene:ENSEOMG00000036547, gene:ENSEOMG00000037593, gene:ENSEOMG00000040429, gene:ENSEOMG00000051227
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0017420, CQ.Regalona.r1.7BG0018140 ... CQ.Regalona.r1.9AG0009280, CQ.Regalona.r1.9BG0014010
Anacardiaceae	Pistacia vera	2	pistato.v30058850, pistato.v30272380
Apiaceae	Apium graveolens	2	Ag2G00949, Ag3G00314
Arecaceae	Cocos nucifera	4	COCNU_04G014170, COCNU_06G006240, COCNU_14G004070 ... scaffold008698G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103702460, gene-LOC103706676, gene-LOC103709660 ... gene-LOC103713183
Asteraceae	Flaveria trinervia	4	Ftri11G25562, Ftri17G05640, Ftri2G21639, Ftri7G10369
Brassicaceae	Arabidopsis thaliana	5	AT1G03870.1, AT2G20520.1, AT5G03170.1, AT5G44130.1 ... AT5G60490.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10002226m.g.v1.0, Thhalv10003262m.g.v1.0 ... Thhalv10008582m.g.v1.0, Thhalv10014491m.g.v1.0, Thhalv10015384m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g02730.v2.2, Sp2g08970.v2.2, Sp3g33750.v2.2 ... Sp6g22070.v2.2, Sp6g39550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g061450.2N, BniB04g017210.2N, BniB05g030800.2N ... BniB08g000980.2N, BniB08g011760.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq02G2752, Ceq08G1311, Ceq08G1729, Ceq08G1730, Ceq08G1731 ... Ceq08G1732, Ceq08G1733, Ceq08G1734, Ceq08G1735
Casuarinaceae	Casuarina glauca	10	Cgl02G2845, Cgl02G2848, Cgl02G2857, Cgl08G1338, Cgl08G1769 ... Cgl08G1770, Cgl08G1771, Cgl08G1772, Cgl08G1773, Cgl08G1774
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno05g15530, gene.Cymno06g03790, gene.Cymno15g07010 ... gene.Cymno16g04300
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g24030, gene.Thate06g02230
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11697, nbisL1-mrna-5538, nbisL1-mrna-8447
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1415, evm.TU.LG04.1763, evm.TU.LG09.934 ... evm.TU.LG09.936
Plantaginaceae	Plantago ovata	3	Pov_00004593, Pov_00006343, Pov_00014661
Poaceae	Echinochloa crus-galli	14	AH02.2685, AH02.570, AH05.1084, AH05.1402, AH07.1538 ... BH02.2764, BH02.575, BH05.1131, BH05.1571, BH07.1494, CH02.3771, CH02.650, CH05.1280, CH05.1771
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0010590, gene-QOZ80_1AG0027960 ... gene-QOZ80_1BG0059090, gene-QOZ80_1BG0078140, gene-QOZ80_2AG0110780, gene-QOZ80_2BG0164270, gene-QOZ80_5AG0363230, gene-QOZ80_5AG0403710, gene-QOZ80_5BG0411320, gene-QOZ80_5BG0452100
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0025530.1.CDS1 ... HORVU.MOREX.r3.1HG0087810.1.CDS1, HORVU.MOREX.r3.3HG0235910.1.CDS1, HORVU.MOREX.r3.3HG0278710.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_009905, gene-QYE76_015525, gene-QYE76_049821 ... gene-QYE76_050096, gene-QYE76_054477
Poaceae	Oryza coarctata	10	Oco01G002350, Oco01G016790, Oco02G002400, Oco02G016980 ... Oco03G008560, Oco04G008960, Oco04G008970, Oco09G003040, Oco09G016780, Oco10G003010
Poaceae	Oryza sativa	6	LOC_Os01g06580.1, LOC_Os01g47780.1, LOC_Os02g20540.1 ... LOC_Os02g20560.1, LOC_Os05g07060.1, LOC_Os05g48890.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G056800, gene-BS78_03G224800, gene-BS78_K198700 ... gene-BS78_09G063400, gene-BS78_09G234900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204419, Pt_Chr0506054
Poaceae	Sporobolus alterniflorus	12	Chr02G013250, Chr02G023070, Chr03G004610, Chr03G013120 ... Chr05G014030, Chr05G020500, Chr08G000470, Chr08G013340, Chr09G001110, Chr18G000430, Chr22G001310, Chr22G014540
Poaceae	Thinopyrum elongatum	4	Tel1E01G195000, Tel1E01G649600, Tel3E01G179800 ... Tel3E01G413200
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG015290, gene_TRIDC1AG058370 ... gene_TRIDC1BG067270, gene_TRIDC3AG012590, gene_TRIDC3AG036960, gene_TRIDC3BG016920, gene_TRIDC3BG040920
Poaceae	Triticum aestivum	12	TraesCS1A02G107500.1.cds1, TraesCS1A02G396700.1.cds1 ... TraesCS1B02G129500.1.cds1, TraesCS1B02G424900.1.cds1, TraesCS1D02G111600.1.cds1, TraesCS1D02G404600.1.cds1, TraesCS3A02G103100.1.cds1, TraesCS3A02G246600.1.cds1, TraesCS3B02G120700.1.cds1, TraesCS3B02G272700.1.cds1, TraesCS3D02G105500.1.cds1, TraesCS3D02G244900.1.cds1
Poaceae	Zea mays	4	Zm00001eb157310_P002, Zm00001eb203300_P001 ... Zm00001eb343680_P001, Zm00001eb353910_P001
Poaceae	Zoysia japonica	5	nbis-gene-13069, nbis-gene-18125, nbis-gene-45238 ... nbis-gene-51705, nbis-gene-6901
Poaceae	Zoysia macrostachya	6	Zma_g12635, Zma_g27377, Zma_g27754, Zma_g7637, Zma_g8400 ... Zma_g9996
Portulacaceae	Portulaca oleracea	5	evm.TU.LG06.1100, evm.TU.LG11.411, evm.TU.LG13.268 ... evm.TU.LG18.720, evm.TU.LG26.308
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g36430, gene.Posoc03g21140, gene.Posoc03g21150 ... gene.Posoc07g14060, gene.Posoc09g04320
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_12_RagTag.348, evm.TU.Scaffold_12_RagTag.350 ... evm.TU.Scaffold_13_RagTag.719, evm.TU.Scaffold_13_RagTag.721, evm.TU.Scaffold_2_RagTag.863, evm.TU.Scaffold_5_RagTag.1310
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-11810, nbisL1-mrna-24386, nbisL1-mrna-24391 ... nbisL1-mrna-24412, nbisL1-mrna-24416, nbisL1-mrna-30328, nbisL1-mrna-4339
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-18801, nbisL1-mrna-19749, nbisL1-mrna-20811 ... nbisL1-mrna-20812, nbisL1-mrna-5398
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16101, nbisL1-mrna-19623, nbisL1-mrna-19624 ... nbisL1-mrna-9977
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000009l.330, add.evm.TU.utg000015l.156 ... add.evm.TU.utg000015l.158, add.evm.TU.utg000027l.153, add.evm.TU.utg000027l.156, evm.TU.utg000027l.361
Rhizophoraceae	Kandelia obovata	4	Maker00004829, Maker00015298, Maker00018165, Maker00018217
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-18446, nbisL1-mrna-18448, nbisL1-mrna-18987 ... nbisL1-mrna-18988, nbisL1-mrna-18989, nbisL1-mrna-20797, nbisL1-mrna-21856
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11844, nbisL1-mrna-11845, nbisL1-mrna-11846 ... nbisL1-mrna-15080, nbisL1-mrna-15081, nbisL1-mrna-5871
Salicaceae	Populus euphratica	19	populus_peu08375, populus_peu11705, populus_peu16730 ... populus_peu16960, populus_peu16962, populus_peu16963, populus_peu18605, populus_peu18606, populus_peu18791, populus_peu18886, populus_peu25742, populus_peu25763, populus_peu29134, populus_peu29151, populus_peu29472, populus_peu30512, populus_peu35485, populus_peu37093, populus_peu37179
Solanaceae	Lycium barbarum	5	gene-LOC132600436, gene-LOC132618420, gene-LOC132626296 ... gene-LOC132630070, gene-LOC132630073
Solanaceae	Solanum chilense	5	SOLCI000535300, SOLCI001871500, SOLCI002614900 ... SOLCI002952900, SOLCI003375400
Solanaceae	Solanum pennellii	5	gene-LOC107003402, gene-LOC107021511, gene-LOC107026533 ... gene-LOC107029688, gene-LOC107030659
Tamaricaceae	Reaumuria soongarica	3	STRG.21441_chr09_-, gene_4533, gene_7570
Tamaricaceae	Tamarix chinensis	3	TC02G1870, TC03G1492, TC07G0682
Zosteraceae	Zostera marina	4	Zosma01g02150.v3.1, Zosma03g13920.v3.1, Zosma05g25570.v3.1 ... Zosma06g12550.v3.1