Basic Information
Locus ID:
nbisL1-mrna-18975
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001299F_pilon | 843273 | 852442 | + | nbisL1-mrna-18975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 116,077.96 Da | 36.74 | 84.53 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 315 | 6.40148E-180 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 3.5E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1012 | 2.5E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 819 | 3.1E-44 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 448 | 2.8E-22 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1015 | 4.71E-139 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 6.12E-106 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 455 | 4.58E-29 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 2.0E-91 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 3.4E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 601 | 2.6E-25 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 454 | 1.1E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 886 | 1018 | 6.6E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 2.9E-120 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 1.0E-24 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 6.0 | - |
| Coils | Coil | Coil | 948 | 968 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_024440866.2 | - | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KS57 | Alpha-mannosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology