Basic Information
Locus ID:
nbisL1-mrna-18950
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001299F_pilon | 677807 | 678847 | + | nbisL1-mrna-18950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 39,064.32 Da | 52.45 | 85.98 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 205 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 296 | 0.0087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 30 | 339 | 4.28E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 345 | 1.2E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 8.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 205 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 112 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 164 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 299 | 10.007177 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021626753.1 | WD repeat-containing protein LWD1 [Manihot esculenta] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JU57 | Transducin family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology