Basic Information
Locus ID:
nbisL1-mrna-18947
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5137242 | 5138369 | - | nbisL1-mrna-18947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 41,052.14 Da | 77.32 | 56.13 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 176 | 217 | 7.22629E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 9.4E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 175 | 217 | 3.7E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 246 | 354 | 8.2E-24 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 223 | 4.42E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 223 | 6.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 216 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 217 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 375 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_012066982.2 | E3 ubiquitin-protein ligase RDUF1 [Jatropha curcas] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NYS7 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology