halophFGD

Basic Information

Locus ID: nbisL1-mrna-18943

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Hypoxia induced protein conserved region

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
001299F_pilon	606134	606610	+	nbisL1-mrna-18943

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.11	8,777.07 Da	48.68	101.50	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04588	Hypoxia induced protein conserved region	10	59	1.8E-8	IPR007667
Gene3D	G3DSA:6.10.140.1320	-	13	71	3.3E-5	-
ProSiteProfiles	PS51503	HIG1 domain profile.	1	76	19.584604	IPR007667

Best hit

Source	Best Hit ID	Description
TAIR	AT5G27760.1	Hypoxia-responsive family protein.
RefSeq	XP_012091193.1	uncharacterized protein LOC105649214 [Jatropha curcas]
TrEMBL	A0A067JNW4	HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg11238, jg14210, jg1423, jg2520, jg28046, jg5666
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10399, gene_17059, gene_17060
Amaranthaceae	Atriplex hortensis	2	Ah005726, Ah035097
Amaranthaceae	Beta vulgaris	2	BVRB_2g029760, BVRB_4g075890
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17166, Sbi_jg21547, Sbi_jg22272, Sbi_jg61777
Amaranthaceae	Salicornia europaea	2	Seu_jg16201, Seu_jg429
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008793, GOSA_00015360
Amaranthaceae	Suaeda glauca	6	Sgl24457, Sgl31616, Sgl32177, Sgl37471, Sgl62743, Sgl67360
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000011000, gene:ENSEOMG00000028004 ... gene:ENSEOMG00000042732
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0020720, CQ.Regalona.r1.4AG0007980 ... CQ.Regalona.r1.4BG0008130
Apiaceae	Apium graveolens	3	Ag3G02264, Ag8G00405, Ag8G01720
Arecaceae	Cocos nucifera	4	COCNU_01G001770, COCNU_04G004200, COCNU_04G010200 ... COCNU_12G002450
Arecaceae	Phoenix dactylifera	5	gene-LOC103698163, gene-LOC103703614, gene-LOC103714403 ... gene-LOC103719721, gene-LOC120110168
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2130.V1.1, AsparagusV1_08.3172.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G24177, Ftri15G18690, Ftri17G32868
Brassicaceae	Arabidopsis thaliana	2	AT3G05550.1, AT5G27760.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005192m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g20920.v2.2, Sp3g04400.v2.2
Brassicaceae	Brassica nigra	2	BniB02g079010.2N, BniB04g004770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0053, Ceq06G1165
Casuarinaceae	Casuarina glauca	1	Cgl06G1216
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g02070, gene.Cymno04g14700, gene.Cymno05g17080 ... gene.Cymno05g17380, gene.Cymno06g04100
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g03070, gene.Thate01g31070, gene.Thate01g31750 ... gene.Thate06g03320, gene.Thate06g24340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1727, evm.TU.LG03.2481
Plantaginaceae	Plantago ovata	3	Pov_00007234, Pov_00011692, Pov_00026115
Plumbaginaceae	Limonium bicolor	2	Lb0G38042, Lb3G20567
Poaceae	Echinochloa crus-galli	11	AH03.4036, AH04.61, AH05.53, AH07.2424, BH03.4372, CH02.2467 ... CH04.152, CH05.39, CH07.143, CH07.2309, Contig2828.2
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0135940, gene-QOZ80_2BG0191480 ... gene-QOZ80_5AG0378950, gene-QOZ80_5BG0426060, gene-QOZ80_7AG0581530, gene-QOZ80_7BG0612600, gene-QOZ80_9AG0672330, gene-QOZ80_9BG0695900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0113270.1, HORVU.MOREX.r3.2HG0193770.1 ... HORVU.MOREX.r3.5HG0464780.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023389, gene-QYE76_038816
Poaceae	Oryza coarctata	5	Oco03G014070, Oco04G014460, Oco13G015600, Oco14G016410 ... Ocoptg000061lG000510
Poaceae	Oryza sativa	4	LOC_Os02g37930.1, LOC_Os07g47670.2, LOC_Os11g02080.1 ... LOC_Os12g02040.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G387300, gene-BS78_04G179900 ... gene-BS78_08G003500, gene-BS78_08G003700
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0204498, Pt_Chr0204502, Pt_Chr0305547, Pt_Chr0702868 ... Pt_Chr0702874, Pt_Chr0703087
Poaceae	Sporobolus alterniflorus	10	Chr04G025340, Chr06G008640, Chr0G002620, Chr0G003450 ... Chr15G010200, Chr15G011150, Chr16G008340, Chr19G011600, Chr24G012580, Chr27G004480
Poaceae	Thinopyrum elongatum	5	Tel1E01G515600, Tel2E01G239300, Tel2E01G240000 ... Tel2E01G752200, Tel5E01G259200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG013350, gene_TRIDC2AG063290 ... gene_TRIDC2BG016280, gene_TRIDC2BG067060, gene_TRIDC5AG024950, gene_TRIDC5BG026180, gene_TRIDC5BG064600, gene_TRIDC6BG050310
Poaceae	Triticum aestivum	10	TraesCS2A02G111000.1, TraesCS2A02G440800.1 ... TraesCS2B02G130000.1, TraesCS2B02G460200.1, TraesCS2D02G111700.1, TraesCS2D02G438000.1, TraesCS3B02G569100.1, TraesCS5A02G148900.1, TraesCS5B02G147500.1, TraesCS5D02G143900.1
Poaceae	Zea mays	7	Zm00001eb111350_P001, Zm00001eb183530_P001 ... Zm00001eb195180_P001, Zm00001eb245840_P001, Zm00001eb262690_P001, Zm00001eb276270_P001, Zm00001eb381190_P001
Poaceae	Zoysia japonica	3	nbis-gene-25818, nbis-gene-29780, nbis-gene-32115
Poaceae	Zoysia macrostachya	5	Zma_g13796, Zma_g16592, Zma_g20951, Zma_g24616, Zma_g7059
Portulacaceae	Portulaca oleracea	9	evm.TU.LG05.517, evm.TU.LG08.693, evm.TU.LG10.42 ... evm.TU.LG13.937, evm.TU.LG17.37, evm.TU.LG20.623, evm.TU.LG21.602, evm.TU.LG22.1301, evm.TU.LG25.807
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g32260, gene.Posoc01g33850, gene.Posoc02g08130
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.108, evm.TU.Scaffold_2_RagTag.2069 ... evm.TU.Scaffold_4_RagTag.894
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14144, nbisL1-mrna-14146, nbisL1-mrna-2730 ... nbisL1-mrna-2845, nbisL1-mrna-8169
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14202, nbisL1-mrna-20714, nbisL1-mrna-5144
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13673, nbisL1-mrna-14296
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.48, evm.TU.utg000012l.76
Rhizophoraceae	Kandelia obovata	2	Maker00005258, Maker00009978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12991, nbisL1-mrna-7883
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16143, nbisL1-mrna-18943, nbisL1-mrna-19368 ... nbisL1-mrna-97
Salicaceae	Populus euphratica	4	populus_peu13352, populus_peu15683, populus_peu19194 ... populus_peu19199
Solanaceae	Lycium barbarum	3	gene-LOC132610330, gene-LOC132626785, gene-LOC132645974
Solanaceae	Solanum chilense	2	SOLCI004614400, SOLCI005753000
Solanaceae	Solanum pennellii	2	gene-LOC107011133, gene-LOC107028491
Tamaricaceae	Reaumuria soongarica	5	MSTRG.9651_chr05_+, gene_5509, gene_5892, gene_9431 ... gene_9432
Zosteraceae	Zostera marina	2	Zosma01g28240.v3.1, Zosma06g21600.v3.1