Basic Information
Locus ID:
nbisL1-mrna-18902
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5813016 | 5813504 | - | nbisL1-mrna-18902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 18,766.07 Da | 34.26 | 77.10 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 111 | 152 | 9.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 156 | 1.16E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 157 | 3.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 151 | 0.0031 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 152 | 10.394352 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08139.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021634673.1 | probable E3 ubiquitin-protein ligase HIP1 [Manihot esculenta] | 0 |
| Q8BGI1 | RING finger protein 24 OS=Mus musculus OX=10090 GN=Rnf24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9WN87 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_01G180000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001239 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51942, Sgl57235 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.995 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30026 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11142 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16358, nbisL1-mrna-19379 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.250 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015563, Maker00018053 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18522, nbisL1-mrna-18902 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11609, nbisL1-mrna-20799 |
| Salicaceae | Populus euphratica | 1 | populus_peu36050 |