Basic Information
Locus ID:
nbisL1-mrna-18875
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 4029012 | 4032012 | + | nbisL1-mrna-18875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 32,084.70 Da | 67.50 | 56.12 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 193 | 257 | 3.43817E-18 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 193 | 260 | 2.9E-11 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 190 | 263 | 1.7E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 177 | 275 | 2.1E-19 | IPR036910 |
| SMART | SM00398 | hmgende2 | 192 | 261 | 1.3E-12 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 193 | 260 | 14.602479 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
| Coils | Coil | Coil | 246 | 269 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021601209.1 | high mobility group B protein 9 [Manihot esculenta] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K8Z6 | Uncharacterized protein MANES_18G008500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology