Basic Information
Locus ID:
nbisL1-mrna-18829
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000223F_pilon | 1579377 | 1583000 | - | nbisL1-mrna-18829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 48,627.92 Da | 48.16 | 72.97 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 280 | 304 | 1.15E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 408 | 3.43E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 324 | 409 | 1.9E-8 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 274 | 323 | 1.3E-5 | - |
| SMART | SM00356 | c3hfinal6 | 18 | 42 | 0.0035 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 280 | 305 | 4.0E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 411 | 0.75 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 279 | 306 | 13.272058 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 17 | 43 | 12.070252 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 278 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021687431.1 | zinc finger CCCH domain-containing protein 48-like isoform X6 [Hevea brasiliensis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LRF4 | Zinc finger CCCH domain-containing protein 63-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology