Basic Information
Locus ID:
nbisL1-mrna-18798
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000223F_pilon | 1355118 | 1363107 | - | nbisL1-mrna-18798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 43,612.96 Da | 40.84 | 97.99 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 73 | 335 | 4.5E-83 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 96 | 334 | 1.42E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 99 | 390 | 7.8E-91 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 100 | 259 | 28.590445 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 266 | 340 | 19.342825 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 281 | 289 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 230 | 259 | 1.1E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 158 | 187 | 1.1E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 192 | 221 | 1.1E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 311 | 340 | 1.1E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 278 | 306 | 1.1E-55 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_030957883.1 | DNA repair protein recA homolog 2, mitochondrial-like [Quercus lobata] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J3I4 | DNA repair protein recA homolog 2-like isoform X1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology