Basic Information
Locus ID:
nbisL1-mrna-18792
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PHD-zinc-finger like domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 3068810 | 3081337 | + | nbisL1-mrna-18792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 176,850.42 Da | 41.01 | 72.05 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15571 | ePHD | 1261 | 1366 | 3.23384E-25 | - |
| Pfam | PF13832 | PHD-zinc-finger like domain | 1260 | 1366 | 9.5E-23 | - |
| Pfam | PF13831 | PHD-finger | 394 | 426 | 3.2E-9 | - |
| Pfam | PF13831 | PHD-finger | 1203 | 1236 | 2.8E-10 | - |
| Pfam | PF13832 | PHD-zinc-finger like domain | 441 | 529 | 2.8E-14 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1184 | 1240 | 8.86E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 373 | 446 | 3.99E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 438 | 543 | 9.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 437 | 8.3E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1258 | 1368 | 2.5E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1178 | 1239 | 8.2E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 380 | 427 | 5.6E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1191 | 1236 | 2.9E-7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1313 | 1367 | 0.89 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1189 | 1238 | 9.1073 | IPR019787 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 1258 | 1367 | 15.325008 | IPR034732 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 438 | 558 | 15.412209 | IPR034732 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 378 | 429 | 9.2675 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1192 | 1235 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 381 | 426 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 672 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77800.4 | - | 0 |
| RefSeq | XP_021681430.1 | uncharacterized protein LOC110665553 isoform X2 [Hevea brasiliensis] | 0 |
| O95696 | Bromodomain-containing protein 1 OS=Homo sapiens OX=9606 GN=BRD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MIM6 | Uncharacterized protein LOC105638874 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12148, jg23202 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1524 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022606 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4104, Sbi_jg49700 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5556 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022010 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10500, Sgl15745 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000015975, gene:ENSEOMG00000032898 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000490, CQ.Regalona.r1.2BG0028520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30040290, pistato.v30041080 |
| Apiaceae | Apium graveolens | 2 | Ag2G01345, Ag4G01265 |
| Arecaceae | Cocos nucifera | 3 | COCNU_13G007840, scaffold000407G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696526, gene-LOC103696693 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1466.V1.1, AsparagusV1_07.3713.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA11068 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018012m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g32980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g057100.2N, BniB05g073950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1898 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2071 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09060 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g23870, gene.Thate06g16200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.977 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021758, Pov_00021759 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27529, Lb5G27547 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.746, AH07.3619, BH06.785, BH07.3429, CH06.817 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0147110, gene-QOZ80_2BG0202710 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0619100.1, HORVU.MOREX.r3.7HG0663440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_025672, gene-QYE76_027355 |
| Poaceae | Oryza coarctata | 4 | Oco03G022800, Oco04G023440, Oco11G004900, Oco12G004950 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g52960.1, LOC_Os06g10690.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G289000, gene-BS78_10G082300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203089, Pt_Chr0404987, Pt_Chr0405024 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G001250, Chr09G018920, Chr11G020500, Chr13G003120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G580500, Tel7E01G321500, Tel7E01G882000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG049340, gene_TRIDC6BG057780 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G329200.1, TraesCS6B02G360000.8 ... |
| Poaceae | Zea mays | 4 | Zm00001eb193530_P001, Zm00001eb256170_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35020, nbis-gene-40076, nbis-gene-4871 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17231, Zma_g29315, Zma_g31555 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1962, evm.TU.LG06.371 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1049, evm.TU.Scaffold_8_RagTag.685 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18792, nbisL1-mrna-9551 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18539, nbisL1-mrna-4769 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18234, nbisL1-mrna-6872 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.796, evm.TU.utg000018l.555 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003167, Maker00010639 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2956, nbisL1-mrna-8177 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20362, nbisL1-mrna-9892 |
| Salicaceae | Populus euphratica | 2 | populus_peu14679, populus_peu32351 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627076 |
| Solanaceae | Solanum chilense | 1 | SOLCI006064400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004550 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15159 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1762 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20110.v3.1 |