Basic Information
Locus ID:
nbisL1-mrna-18735
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001761F_pilon | 977680 | 979671 | + | nbisL1-mrna-18735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 72,958.50 Da | 52.92 | 93.58 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 206 | 243 | 3.97392E-8 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 406 | 645 | 4.3E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 207 | 250 | 3.5E-8 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 352 | 646 | 1.2E-61 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 205 | 250 | 3.27E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 205 | 260 | 4.0E-10 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 352 | 441 | 4.8E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 443 | 650 | 1.5E-48 | - |
| SMART | SM00257 | LysM_2 | 140 | 186 | 17.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 206 | 250 | 5.4E-10 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 330 | 653 | 30.718142 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 205 | 249 | 12.369842 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_034931353.1 | LOW QUALITY PROTEIN: protein LYK5 [Populus alba] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8CUX7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020265 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology