Basic Information
Locus ID:
nbisL1-mrna-18735
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
HEMB
Description:
Delta-aminolevulinic acid dehydratase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 2578481 | 2585964 | + | nbisL1-mrna-18735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 38,803.10 Da | 41.43 | 87.91 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 79 | 124 | 1.4E-12 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 75 | 157 | 1.3E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 69 | 159 | 2.1E-13 | - |
| SMART | SM00256 | fbox_2 | 81 | 121 | 6.5E-10 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 75 | 121 | 12.093921 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00860 (Porphyrin metabolism)
map00860 (Porphyrin metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21760.1 | F-box protein 7. This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. | 0 |
| RefSeq | XP_021605599.1 | - | 0 |
| Q9XI00 | F-box protein 7 OS=Arabidopsis thaliana OX=3702 GN=SKIP32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IKR5 | Uncharacterized protein MANES_02G164400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12087 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23006 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023667 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4219, Sbi_jg49584 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5657 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000997 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10616, Sgl15869 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014347, gene:ENSEOMG00000034019 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0010260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039660 |
| Apiaceae | Apium graveolens | 1 | Ag3G01075 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701268 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.957.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G30484, FtriNA05041, FtriNA11569 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008543m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1800 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0276s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.877 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027557, Pov_00037824 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23066 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1021, BH09.1095, CH09.1230 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317380, gene-QOZ80_4BG0348710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168640.1 |
| Poaceae | Oryza coarctata | 1 | Oco07G006000 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35190.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G096700, gene-BS78_06G098100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302676, Pt_Chr0302710, Pt_Chr0302712, Pt_Chr0302715 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G012960, Chr25G011250, Chr26G006610, Chr30G010830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G535400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG044010, gene_TRIDC2BG046710 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G303500.1, TraesCS2B02G320100.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb082740_P001, Zm00001eb422580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7665 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.764, evm.TU.LG04.19 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g20050, gene.Posoc05g20100, gene.Posoc05g20120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1111 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18735 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5573 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13103 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011692 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8129 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9827 |
| Salicaceae | Populus euphratica | 2 | populus_peu14742, populus_peu32421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627002 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002852 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2233 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11670.v3.1 |