Basic Information
Locus ID:
nbisL1-mrna-18734
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001761F_pilon | 965301 | 974650 | + | nbisL1-mrna-18734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 65,074.09 Da | 52.59 | 77.43 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 278 | 315 | 4.11769E-7 | IPR018392 |
| CDD | cd01390 | HMGB-UBF_HMG-box | 37 | 88 | 5.45428E-14 | - |
| Pfam | PF00069 | Protein kinase domain | 394 | 561 | 4.4E-27 | IPR000719 |
| Pfam | PF01476 | LysM domain | 279 | 322 | 4.1E-7 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 277 | 322 | 1.28E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 545 | 6.46E-43 | IPR011009 |
| SUPERFAMILY | SSF47095 | HMG-box | 29 | 93 | 1.57E-14 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 21 | 107 | 2.1E-8 | IPR036910 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 384 | 568 | 1.0E-44 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 265 | 333 | 1.2E-8 | IPR036779 |
| SMART | SM00257 | LysM_2 | 278 | 322 | 9.5E-9 | IPR018392 |
| SMART | SM00398 | hmgende2 | 36 | 92 | 9.4E-9 | IPR009071 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 287 | 592 | 21.319031 | IPR000719 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 37 | 91 | 11.894103 | IPR009071 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 277 | 321 | 11.22053 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 122 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_034931353.1 | LOW QUALITY PROTEIN: protein LYK5 [Populus alba] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8CUX7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020265 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology