Basic Information
Locus ID:
nbisL1-mrna-18710
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
CPK13
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12930135 | 12930830 | + | nbisL1-mrna-18710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 25,697.19 Da | 39.22 | 88.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 56 | 210 | 1.5E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 52 | 210 | 3.78E-46 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 139 | 6.1E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 140 | 221 | 1.4E-20 | - |
| SMART | SM00220 | serkin_6 | 54 | 224 | 5.1E-14 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 54 | 231 | 28.159887 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 174 | 186 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 60 | 83 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.3 | - | 0 |
| RefSeq | XP_021906248.1 | calcium-dependent protein kinase 13 [Carica papaya] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LN27 | Uncharacterized protein MANES_08G092800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah039308 |
| Apiaceae | Apium graveolens | 2 | Ag1G00989, Ag2G00231 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027910.2N |
| Poaceae | Zea mays | 3 | Zm00001eb016070_P001, Zm00001eb024950_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1403, nbis-gene-38648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13613, nbisL1-mrna-18710 |
| Salicaceae | Populus euphratica | 1 | populus_peu24041 |