Basic Information
Locus ID:
nbisL1-mrna-18698
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001761F_pilon | 702734 | 707026 | + | nbisL1-mrna-18698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 44,371.82 Da | 64.52 | 80.88 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 10 | 151 | 2.52485E-51 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 202 | 245 | 4.55713E-23 | - |
| Pfam | PF13639 | Ring finger domain | 202 | 245 | 1.1E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 64 | 146 | 8.5E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 155 | 1.44E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 257 | 5.89E-20 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 158 | 6.4E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 250 | 3.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 244 | 2.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 245 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_011001793.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2-like isoform X2 [Populus euphratica] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KS26 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology