Basic Information
Locus ID:
nbisL1-mrna-18676
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box protein At5g07610-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 1977867 | 1979126 | - | nbisL1-mrna-18676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 47,959.69 Da | 59.43 | 86.75 | -0.14 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_022143222.1 | - | 0 |
| Q9FZF8 | Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8K0HGG8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10706, jg10708, jg2826 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183860 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G016320 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G03970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g38780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g056630.2N, BniB05g030010.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2224 |
| Plantaginaceae | Plantago ovata | 35 | Pov_00001257, Pov_00001258, Pov_00001265, Pov_00001285 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0645680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.298, evm.TU.Scaffold_7_RagTag.1161 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18676, nbisL1-mrna-7863 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5839 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5357 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000012l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010901 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19866, nbisL1-mrna-20279, nbisL1-mrna-20280 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18376, nbisL1-mrna-18377, nbisL1-mrna-273 |
| Salicaceae | Populus euphratica | 1 | populus_peu19581 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132598411, gene-LOC132600302, gene-LOC132602082 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002718700, SOLCI004927400, SOLCI007073600 |
| Solanaceae | Solanum pennellii | 6 | gene-LOC107003407, gene-LOC107004445, gene-LOC107004456 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19756_chr07_- |