Basic Information
Locus ID:
nbisL1-mrna-18669
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Serine threonine-protein kinase-like protein CCR4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001761F_pilon | 535792 | 538165 | + | nbisL1-mrna-18669 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 66,397.75 Da | 50.25 | 80.05 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 236 | 262 | 1.3E-7 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 204 | 225 | 2.5E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 466 | 553 | 7.06E-14 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 104 | 302 | 1.74E-22 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 232 | 307 | 1.0E-9 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 456 | 553 | 9.7E-22 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 50 | 231 | 2.1E-9 | IPR009091 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 482 | 614 | 9.559545 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 488 | 510 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_048227388.1 | serine/threonine-protein kinase-like protein CCR4 [Ricinus communis] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QL76 | Serine/threonine-protein kinase-like protein CCR4 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology