Basic Information
Locus ID:
nbisL1-mrna-18610
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 2990052 | 2997251 | + | nbisL1-mrna-18610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 90,606.65 Da | 47.49 | 71.04 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 186 | 282 | 6.5773E-46 | - |
| Pfam | PF00564 | PB1 domain | 199 | 281 | 1.1E-19 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 198 | 283 | 2.65E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 201 | 283 | 6.3E-12 | - |
| SMART | SM00666 | PB1_new | 197 | 284 | 1.1E-28 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 557 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021630743.2 | uncharacterized protein LOC110628407 [Manihot esculenta] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IMV1 | Uncharacterized protein MANES_12G042400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology