Basic Information
Locus ID:
nbisL1-mrna-18552
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Domain of unknown function (DUF4033)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 2594095 | 2596384 | - | nbisL1-mrna-18552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 30,154.87 Da | 54.52 | 86.27 | -0.13 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01995.1 | 0 | |
| RefSeq | XP_021675828.1 | beta-carotene isomerase D27, chloroplastic [Hevea brasiliensis] | 0 |
| R4HZ96 | Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0B3 | Uncharacterized protein MANES_17G076100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35108 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19257 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000096 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121940 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31311, Sbi_jg431, Sbi_jg57967 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25595 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004485 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54542, Sgl59883 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004652, gene:ENSEOMG00000023618 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0028710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30008020 |
| Apiaceae | Apium graveolens | 1 | Ag9G02309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G011100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G19936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01995.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028897m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g040410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1056 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1098 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00011.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.464 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016474 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10132 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.868, BH01.4316, CH05.1051 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0406290, gene-QOZ80_5BG0454340 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009343 |
| Poaceae | Oryza coarctata | 1 | Oco09G001500 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g04070.1, LOC_Os05g04090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G030300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0500286 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G023740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G152200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG010150, gene_TRIDC1AG010240 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G073000.2, TraesCS1B02G092200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb417120_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18274 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1258, evm.TU.LG09.710 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.739 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21481 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14722 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18552 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.634 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009132 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1617 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5301 |
| Salicaceae | Populus euphratica | 1 | populus_peu31346 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608807 |
| Solanaceae | Solanum chilense | 1 | SOLCI004830300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023692 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17534_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2827 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38870.v3.1 |