Basic Information
Locus ID:
nbisL1-mrna-18549
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 2576533 | 2581457 | - | nbisL1-mrna-18549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 65,628.30 Da | 59.10 | 56.51 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 530 | 561 | 7.8E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 429 | 514 | 4.8E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 429 | 514 | 4.0E-32 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 37 | - | - |
| Coils | Coil | Coil | 418 | 455 | - | - |
| Coils | Coil | Coil | 560 | 580 | - | - |
| Coils | Coil | Coil | 467 | 487 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021675821.1 | calponin homology domain-containing protein DDB_G0272472-like [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2JCK1 | Uncharacterized protein LOC105642632 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology