Basic Information
Locus ID:
nbisL1-mrna-1852
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Translocase of chloroplast 90
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5411208 | 5414481 | + | nbisL1-mrna-1852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 85,524.67 Da | 39.99 | 89.69 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 496 | 760 | 1.1E-116 | IPR024283 |
| Pfam | PF04548 | AIG1 family | 151 | 281 | 5.4E-20 | IPR006703 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 145 | 278 | 4.11E-17 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 118 | 361 | 1.4E-49 | IPR027417 |
| TIGRFAM | TIGR00993 | 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains | 43 | 760 | 4.0E-207 | IPR005690 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 147 | 377 | 25.28479 | IPR006703 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 492 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_024459909.2 | translocase of chloroplast 90, chloroplastic [Populus trichocarpa] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K9C8 | AIG1-type G domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology