Basic Information
Locus ID:
nbisL1-mrna-1848
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15521854 | 15526596 | - | nbisL1-mrna-1848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 48,176.57 Da | 65.94 | 85.71 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 16 | 165 | 2.21449E-54 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 235 | 278 | 2.84743E-22 | - |
| Pfam | PF02225 | PA domain | 63 | 144 | 1.7E-8 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 8.1E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 81 | 154 | 5.36E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 286 | 3.26E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 158 | 3.5E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 283 | 3.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 277 | 2.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 382 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_039024686.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Hibiscus syriacus] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2YSC4 | Receptor-like proteiny region, transmembrane domain-and RING domain-containing protein 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology