Basic Information
Locus ID:
nbisL1-mrna-18479
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein 89 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 2203470 | 2213214 | - | nbisL1-mrna-18479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 80,931.33 Da | 43.06 | 89.75 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06465 | p23_hB-ind1_like | 165 | 262 | 2.56106E-35 | - |
| CDD | cd01647 | RT_LTR | 1 | 107 | 3.36703E-34 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 3 | 111 | 1.4E-8 | IPR000477 |
| Pfam | PF04969 | CS domain | 166 | 241 | 5.7E-9 | IPR007052 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 113 | 2.0E-32 | IPR043502 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 387 | 663 | 2.65E-27 | IPR036322 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 161 | 290 | 4.71E-26 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 162 | 293 | 9.9E-27 | IPR008978 |
| Gene3D | G3DSA:3.30.70.270 | - | 58 | 155 | 4.8E-6 | IPR043128 |
| Gene3D | G3DSA:2.130.10.10 | - | 382 | 637 | 1.2E-23 | IPR015943 |
| Gene3D | G3DSA:3.30.70.270 | - | 1 | 57 | 3.0E-12 | IPR043128 |
| SMART | SM00320 | WD40_4 | 404 | 445 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 532 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 488 | 5.0 | IPR001680 |
| ProSiteProfiles | PS51203 | CS domain profile. | 162 | 251 | 16.633932 | IPR007052 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 152 | 8.568132 | IPR000477 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 448 | 9.305395 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 304 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47790.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034911710.1 | WD repeat-containing protein GTS1-like [Populus alba] | 0 |
| Q944S2 | WD repeat-containing protein GTS1 OS=Arabidopsis thaliana OX=3702 GN=GTS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A498K5K4 | CS domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_002665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8883 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5205 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029981 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164680 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1375, Sbi_jg35197, Sbi_jg35198 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3354 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003535 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73713, Sgl77212 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006818, gene:ENSEOMG00000033977 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0013180, CQ.Regalona.r1.7BG0015120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009240 |
| Apiaceae | Apium graveolens | 2 | Ag8G01032, AgUnG01463 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G009010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721567 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1320.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G16212 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G47790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g29720.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000070.2N, BniB07g000280.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0948 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0177s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g20400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6263, nbisL1-mrna-9627 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024864 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G21509, Lb4G21519, Lb4G21525 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3281, BH05.3308, CH05.3411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0388070, gene-QOZ80_5BG0436770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0634460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016899 |
| Poaceae | Oryza coarctata | 2 | Oco23G005800, Oco24G004780 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g19590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G044900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404065, Pt_Chr0404084 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G014500, Chr27G001210 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G736900, Tel5E01G327900, Tel7E01G011000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG070750, gene_TRIDC7AG000300 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G498400.1, TraesCS7A02G002100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb157470_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12469 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25732 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.139, evm.TU.LG04.616 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g11640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.819 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21406 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19960 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18479 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.583 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009395 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1562 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5229 |
| Salicaceae | Populus euphratica | 2 | populus_peu27243, populus_peu31231 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608937 |
| Solanaceae | Solanum chilense | 1 | SOLCI001155500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031685 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.706_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0355 |
| Zosteraceae | Zostera marina | 2 | Zosma06g29870.v3.1, Zosma06g29880.v3.1 |