Basic Information
Locus ID:
nbisL1-mrna-18448
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 6590548 | 6591408 | - | nbisL1-mrna-18448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 30,434.05 Da | 47.24 | 91.43 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 94 | 226 | 7.9E-17 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 79 | 227 | 7.06E-24 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 65 | 226 | 1.4E-17 | IPR036378 |
| SMART | SM00554 | fasc_3 | 122 | 227 | 1.8E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 81 | 224 | 18.875071 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_024441931.1 | fasciclin-like arabinogalactan protein 12 [Populus trichocarpa] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K1XGF0 | FAS1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G013300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology