Basic Information
Locus ID:
nbisL1-mrna-18442
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
CDPK9
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 195296 | 198763 | + | nbisL1-mrna-18442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 48,062.29 Da | 29.02 | 88.88 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 335 | 394 | 4.38307E-16 | IPR002048 |
| CDD | cd00051 | EFh | 265 | 322 | 1.09546E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 2 | 188 | 9.7E-40 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 264 | 323 | 2.3E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 334 | 394 | 2.4E-13 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 205 | 4.32E-49 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 254 | 394 | 7.74E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 35 | 212 | 1.1E-35 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 34 | 1.2E-8 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 222 | 396 | 4.7E-57 | - |
| SMART | SM00220 | serkin_6 | 1 | 200 | 1.9E-29 | IPR000719 |
| SMART | SM00054 | efh_1 | 298 | 326 | 0.067 | IPR002048 |
| SMART | SM00054 | efh_1 | 334 | 362 | 0.0018 | IPR002048 |
| SMART | SM00054 | efh_1 | 368 | 396 | 1.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 262 | 290 | 1.9E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 258 | 293 | 14.039183 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 330 | 365 | 15.406057 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 294 | 329 | 9.93856 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 215 | 32.343552 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 368 | 399 | 12.05861 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 307 | 319 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 343 | 355 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 377 | 389 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 271 | 283 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 69 | 81 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23580.1 | calmodulin-like domain protein kinase 9. unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ | 0 |
| RefSeq | XP_030532020.1 | calcium-dependent protein kinase 11 [Rhodamnia argentea] | 0 |
| P28583 | Calcium-dependent protein kinase SK5 OS=Glycine max OX=3847 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8PB20 | calcium-dependent protein kinase 11 OS=Rhodamnia argentea OX=178133 GN=LOC115742043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |