Basic Information
Locus ID:
nbisL1-mrna-18430
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000107F_pilon | 1883037 | 1885028 | + | nbisL1-mrna-18430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 45,078.23 Da | 42.83 | 104.82 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 199 | 213 | 0.5 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 155 | 174 | 0.018 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 75 | 7.9E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 376 | 6.57E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 198 | 1.6E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 199 | 294 | 7.3E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 295 | 377 | 1.7E-10 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 413 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_021612328.1 | LRR receptor-like serine/threonine-protein kinase ER1 [Manihot esculenta] | 0 |
| TrEMBL | A0A2C9VU21 | LRRNT_2 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_05G070900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology