Basic Information
Locus ID:
nbisL1-mrna-18424
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Kelch
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 7270557 | 7271843 | - | nbisL1-mrna-18424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 46,830.08 Da | 65.20 | 81.33 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 186 | 226 | 2.2E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 50 | 91 | 2.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 111 | 5.76E-14 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 125 | 425 | 2.35E-32 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 44 | 93 | 1.1E-8 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 112 | 427 | 1.0E-31 | IPR015915 |
| SMART | SM00612 | kelc_smart | 198 | 242 | 1.3E-8 | IPR006652 |
| SMART | SM00256 | fbox_2 | 54 | 94 | 5.6E-7 | IPR001810 |
| SMART | SM00612 | kelc_smart | 158 | 197 | 20.0 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 48 | 94 | 10.928167 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26960.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021690369.1 | F-box/kelch-repeat protein At5g26960-like [Hevea brasiliensis] | 0 |
| Q6NPN5 | F-box/kelch-repeat protein At5g26960 OS=Arabidopsis thaliana OX=3702 GN=At5g26960 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9WDZ8 | F-box domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G135500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8486 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005109 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17355, Sbi_jg61998 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg618 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015509 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24323, Sgl29495 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008937, gene:ENSEOMG00000028876 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002560, CQ.Regalona.r1.4BG0002660 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G006540 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705052, gene-LOC103706274 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26934 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G26960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g21080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g038890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1676 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1670 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g13400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g09730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026663 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1568, AH04.217, AH05.136, BH04.215, CH04.231, CH05.215 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0673730, gene-QOZ80_UnG0725210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0461830.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003310 |
| Poaceae | Oryza coarctata | 2 | Oco22G001410, Oco24G000770 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g30160.1, LOC_Os11g04330.1, LOC_Os12g04130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G037100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G021720, Chr06G023420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G243400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG023280, gene_TRIDC5BG024240 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G137000.1.cds1, TraesCS5B02G135700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb196340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40137 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17538 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.300 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.616 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30451 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17373 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15999 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.132 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18424 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15175 |
| Salicaceae | Populus euphratica | 2 | populus_peu01816, populus_peu36000 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600752 |
| Solanaceae | Solanum chilense | 1 | SOLCI007372100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003348 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4725 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2953 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27560.v3.1 |